create_components: Create components

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Create components

Description

This function create components from edges

Usage

create_components(
  input = get_params(step = "create_components")$files$networks$spectral$edges$prepared,
  output = get_params(step = "create_components")$files$networks$spectral$components$raw
)

Arguments

input	Input file(s) containing edges
output	Output file.

Value

The path to the created components

Examples

## Not run: 
tima:::copy_backbone()
go_to_cache()
github <- "https://raw.githubusercontent.com/"
repo <- "taxonomicallyinformedannotation/tima-example-files/main/"
data_interim <- "data/interim/"
dir <- paste0(github, repo)
dir <- paste0(dir, data_interim)
get_file(
  url = paste0(dir, "features/example_edges.tsv"),
  export = get_params(step = "create_components")$files$networks$spectral$edges$prepared
)
create_components()
unlink("data", recursive = TRUE)

## End(Not run)

taxonomicallyinformedannotation/tima-r documentation built on Dec. 20, 2024, 9:32 a.m.