get_organism_taxonomy_ott: Get organism taxonomy (Open Tree of Life Taxonomy)

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Get organism taxonomy (Open Tree of Life Taxonomy)

Description

This function retrieves taxonomy from the Open Tree of Life taxonomy

Usage

get_organism_taxonomy_ott(
  df,
  url = "https://api.opentreeoflife.org/v3/taxonomy/about",
  retry = TRUE
)

Arguments

df	Dataframe containing your organism(s) name(s)
url	url of the ott api (for testing purposes)
retry	Boolean. Retry with generic epithet

Examples

NULL

taxonomicallyinformedannotation/tima-r documentation built on May 17, 2024, 6:30 a.m.