filter_annotations: Filter annotations

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Filter annotations

Description

This function filters initial annotations.

Usage

filter_annotations(
  annotations = get_params(step =
    "filter_annotations")$files$annotations$prepared$structural,
  features = get_params(step = "filter_annotations")$files$features$prepared,
  filter_nitro = get_params(step = "filter_annotations")$options$nitrogen_rule,
  rts = get_params(step = "filter_annotations")$files$libraries$temporal$prepared,
  output = get_params(step = "filter_annotations")$files$annotations$filtered,
  tolerance_rt = get_params(step = "filter_annotations")$ms$tolerances$rt$minutes
)

Arguments

annotations	Prepared annotations file
features	Prepared features file
filter_nitro	Filter according to Nitrogen rule. Boolean
rts	Prepared retention time library
output	Output file
tolerance_rt	Tolerance to filter retention time

Examples

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taxonomicallyinformedannotation/tima-r documentation built on May 17, 2024, 6:30 a.m.