decorate_bio: Decorate bio

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Decorate bio

Description

This function outputs information about biological weighting

Usage

decorate_bio(
  annot_table_wei_bio = get("annot_table_wei_chemo", envir = parent.frame()),
  score_biological_kingdom = get("score_biological_kingdom", envir = parent.frame()),
  score_biological_phylum = get("score_biological_phylum", envir = parent.frame()),
  score_biological_class = get("score_biological_class", envir = parent.frame()),
  score_biological_order = get("score_biological_order", envir = parent.frame()),
  score_biological_family = get("score_biological_family", envir = parent.frame()),
  score_biological_tribe = get("score_biological_tribe", envir = parent.frame()),
  score_biological_genus = get("score_biological_genus", envir = parent.frame()),
  score_biological_species = get("score_biological_species", envir = parent.frame()),
  score_biological_variety = get("score_biological_variety", envir = parent.frame())
)

Arguments

annot_table_wei_bio	Table to decorate
score_biological_kingdom	Kingdom score
score_biological_phylum	Phylum score
score_biological_class	Class score
score_biological_order	Order score
score_biological_family	Family score
score_biological_tribe	Tribe score
score_biological_genus	Genus score
score_biological_species	Species score
score_biological_variety	Variety score

Value

Message indicating the number of annotations weighted at each biological level

Examples

NULL

taxonomicallyinformedannotation/tima-r documentation built on May 17, 2024, 6:30 a.m.