decorate_chemo: Decorate chemo

In taxonomicallyinformedannotation/tima-r: Taxonomically Informed Metabolite Annotation

Decorate chemo

Description

This function outputs information about chemical weighting

Usage

decorate_chemo(
  annot_table_wei_chemo = get("annot_table_wei_chemo", envir = parent.frame()),
  score_chemical_cla_kingdom = get("score_chemical_cla_kingdom", envir = parent.frame()),
  score_chemical_cla_superclass = get("score_chemical_cla_superclass", envir =
    parent.frame()),
  score_chemical_cla_class = get("score_chemical_cla_class", envir = parent.frame()),
  score_chemical_cla_parent = get("score_chemical_cla_parent", envir = parent.frame()),
  score_chemical_npc_pathway = get("score_chemical_npc_pathway", envir = parent.frame()),
  score_chemical_npc_superclass = get("score_chemical_npc_superclass", envir =
    parent.frame()),
  score_chemical_npc_class = get("score_chemical_npc_class", envir = parent.frame())
)

Arguments

annot_table_wei_chemo	Table to decorate
score_chemical_cla_kingdom	Classyfire kingdom score
score_chemical_cla_superclass	Classyfire superclass score
score_chemical_cla_class	Classyfire class score
score_chemical_cla_parent	Classyfire parent score
score_chemical_npc_pathway	NPC pathway score
score_chemical_npc_superclass	NPC superclass score
score_chemical_npc_class	NPC class score

Value

Message indicating the number of annotations weighted at each chemical level

Examples

NULL

taxonomicallyinformedannotation/tima-r documentation built on May 17, 2024, 6:30 a.m.