controlFileTasksModel: controlFileTasksModel

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

Executes all model tasks after checks have been performed, including execution of model estimation, diagnostics, prediction, scenarios, and mapping

Executed By: startModelRun.R
Executes Routines:

• batchMaps.R

• diagnosticSpatialAutoCorr.R

• estimate.R

• estimateBootstraps.R

• named.list.R

• outputSettings.R

• predict.R

• predictBootsOutCSV.R

• predictBootstraps.R

• predictOutCSV.R

• predictScenarios.R

• unPackList.R

Usage

controlFileTasksModel(file.output.list, SelParmValues, betavalues,
  Csites.weights.list, subdata, data_names, DataMatrix.list, sitedata,
  Vsites.list, vsitedata, numsites, class.input.list, Cor.ExplanVars.list,
  minimum_reaches_separating_sites, if_estimate, if_estimate_simulation,
  dlvdsgn, estimate.input.list, if_predict, if_validate, sitedata.landuse,
  vsitedata.landuse, sitedata.demtarea.class, vsitedata.demtarea.class,
  mapping.input.list, iseed, biters, scenario.input.list, batch_mode,
  RSPARROW_errorOption)

Arguments

SelParmValues	selected parameters from parameters.csv using condition ifelse((parmMax > 0 | (parmType=="DELIVF" & parmMax>=0)) & (parmMin<parmMax) & ((parmType=="SOURCE" & parmMin>=0) | parmType!="SOURCE")
betavalues	data.frame of model parameters from parameters.csv
subdata	data.frame input data (subdata)
data_names	data.frame of variable metadata from data_Dictionary.csv file
sitedata	Sites selected for calibration using subdata[(subdata$depvar > 0), ]
vsitedata	sitedata for validation. Calculated by subdata[(subdata$vdepvar > 0), ]
numsites	number of sites selected for calibration
minimum_reaches_separating_sites	number indicating the minimum number of reaches separating sites
if_estimate	yes/no indicating whether or not estimation is run
if_estimate_simulation	character string setting from sparrow_control.R indicating whether estimation should be run in simulation mode only.
dlvdsgn	design matrix imported from design_matrix.csv
if_predict	yes/no indicating whether or not prediction is run
if_validate	yes/no indicating whether or not validation is run
iseed	User specified initial seed for the bootstraps from sparrow_control
biters	User specified number of parametric bootstrap iterations from sparrow_control
batch_mode	yes/no character string indicating whether RSPARROW is being run in batch mode
RSPARROW_errorOption

Value

runTimes named list of run times for bootstrap estimation, bootstrap prediction, mapping, and estimate.list

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.