diagnosticPlotsNLLS: diagnosticPlotsNLLS

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

Creates diagnostic plots and maps output to ~/estimate/(run_id)_diagnostic_plots.pdf, and saves residual maps as shape files.

Executed By: estimate.R
Executes Routines:

• checkBinaryMaps.R

• diagnosticMaps.R

• mapSiteAttributes.R

• unPackList.R

Usage

diagnosticPlotsNLLS(file.output.list, class.input.list,
  sitedata.demtarea.class, sitedata, sitedata.landuse, estimate.list,
  mapping.input.list, Csites.weights.list, Cor.ExplanVars.list, data_names,
  add_vars, batch_mode)

Arguments

sitedata	Sites selected for calibration using subdata[(subdata$depvar > 0), ]
data_names	data.frame of variable metadata from data_Dictionary.csv file
add_vars	additional variables specified by the setting add_vars to be included in prediction, yield, and residuals csv and shape files
batch_mode	yes/no character string indicating whether RSPARROW is being run in batch mode

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.