diagnosticSpatialAutoCorr: diagnosticSpatialAutoCorr

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

Generates diagnostics for spatial dependence (autocorrelation) in the model residuals. SiteIDs are determined from hydseq sorted file to ensure consistency in hydrologic distance and other ID ordering across programs. Outputs plots to ~/estimate/(run_id)_diagnostic_spatialautocor.pdf. Outputs Morans I stats to ~/estimate/(run_id)_diagnostic_spatialautocor.txt. Outputs Morans I stats to ~/estimate/summaryCSV/(run_id)_EuclideanMoransI.csv

Executed By: controlFileTasksModel.R
Executes Routines:

• fixDupLatLons.R

• unPackList.R

Usage

diagnosticSpatialAutoCorr(file.output.list, classvar, sitedata, numsites,
  estimate.list, estimate.input.list, subdata)

Arguments

classvar	character vector of user specified spatially contiguous discrete classification variables from sparrow_control. First element is reach classification variable.
sitedata	Sites selected for calibration using subdata[(subdata$depvar > 0), ]
numsites	number of sites selected for calibration
subdata	data.frame input data (subdata)

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.