estimateNLLSmetrics: estimateNLLSmetrics

In tbep-tech/tbepRSparrow: RSPARROW: An R system for SPARROW modeling

Description

Computes all model performance and other summary metrics and diagnostics for the estimated model for calibration sites, as reported in the ~/estimate/(run_id)_summary.txt file.

Executed By: estimate.R
Executes Routines:

• eigensort.R

• errorOccurred.R

• estimateFeval.R

• estimateFevalNoadj.R

• getVarList.R

• named.list.R

• unPackList.R

Usage

estimateNLLSmetrics(if_estimate, if_estimate_simulation, if_sparrowEsts,
  sparrowEsts, file.output.list, classvar, dlvdsgn, Csites.weights.list,
  estimate.input.list, Csites.list, SelParmValues, subdata, sitedata,
  DataMatrix.list, batch_mode)

Arguments

if_estimate	yes/no indicating whether or not estimation is run
if_estimate_simulation	character string setting from sparrow_control.R indicating whether estimation should be run in simulation mode only.
if_sparrowEsts	value of 1 if_estimate_simulation<-'no' indicating calculation of Jacobian diagnostics and 0 if_estimate_simulation<-'yes' indicating no calculation of Jacobian diagnostics
sparrowEsts	list object contained in estimate.list if_estimate<-'yes'. For more details see documentation Section 5.2.4.4.
classvar	character vector of user specified spatially contiguous discrete classification variables from sparrow_control. First element is reach classification variable.
dlvdsgn	design matrix imported from design_matrix.csv
SelParmValues	selected parameters from parameters.csv using condition ifelse((parmMax > 0 | (parmType=="DELIVF" & parmMax>=0)) & (parmMin<parmMax) & ((parmType=="SOURCE" & parmMin>=0) | parmType!="SOURCE")
subdata	data.frame input data (subdata)
sitedata	Sites selected for calibration using subdata[(subdata$depvar > 0), ]
batch_mode	yes/no character string indicating whether RSPARROW is being run in batch mode

Value

estimate.metrics.list named list of summary metrics. For more details see documentation section 5.2.4

tbep-tech/tbepRSparrow documentation built on Oct. 9, 2020, 6:24 a.m.