Description Usage Arguments Value
View source: R/estimateNLLSmetrics.R
Computes all model performance and other summary metrics and diagnostics for
the estimated model for calibration sites, as reported in the ~/estimate/(run_id)_summary.txt
file.
Executed By: estimate.R
Executes Routines:
eigensort.R
errorOccurred.R
estimateFeval.R
estimateFevalNoadj.R
getVarList.R
named.list.R
unPackList.R
1 2 3 4 | estimateNLLSmetrics(if_estimate, if_estimate_simulation, if_sparrowEsts,
sparrowEsts, file.output.list, classvar, dlvdsgn, Csites.weights.list,
estimate.input.list, Csites.list, SelParmValues, subdata, sitedata,
DataMatrix.list, batch_mode)
|
if_estimate |
yes/no indicating whether or not estimation is run |
if_estimate_simulation |
character string setting from sparrow_control.R indicating whether estimation should be run in simulation mode only. |
if_sparrowEsts |
value of 1 |
sparrowEsts |
list object contained in estimate.list |
classvar |
character vector of user specified spatially contiguous discrete classification variables from sparrow_control. First element is reach classification variable. |
dlvdsgn |
design matrix imported from design_matrix.csv |
SelParmValues |
selected parameters from parameters.csv using condition
|
subdata |
data.frame input data (subdata) |
sitedata |
Sites selected for calibration using |
batch_mode |
yes/no character string indicating whether RSPARROW is being run in batch mode |
estimate.metrics.list
named list of summary metrics. For more details see
documentation section 5.2.4
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