Man pages for tchitchek-lab/CytoCompare
Computational comparisons of cytometry profiles
| as.CELL-methods | Coercion to a CELL object |
| as.CLUSTER-methods | Coercion to a CLUSTER object |
| cdf.density | Cumulative distribution function of a DENSITY object |
| cdf.uniform | Cumulative distribution function of a uniform distribution |
| CLUSTER-class | CLUSTER class definition |
| c-methods | Combination of CytoCompare objects |
| compare-methods | Compare two cytometry profiles. |
| create.MWEIGHTS | Creation of a MWEIGHTS object |
| DENSITY-class | DENSITY class definition |
| dheatmap | Density heatmap of the marker expression |
| export-methods | Exportation of CELL objects |
| extract-methods | Extraction of subsets of data from CytoCompare objects |
| import.CITRUS | Importation of cell cluster profiles from a Citrus result |
| import.CLUSTER | Importation of cell cluster profiles from a tab separated... |
| import.FCS | Importation of cell profiles from one or several FCS files |
| import.SPADE | Importation of cell cluster profiles from SPADE results |
| import.VISNE_ACCENSE | Importation of cell cluster profiles from viSNE/ACCENSE... |
| intersect-methods | Identification of common markers between two cytometry... |
| load.examples | Retrieving of an example dataset of CytoCompare objects |
| MWEIGHTS-class | MWEIGHTS class definition |
| plot-methods | Plot for all S4 CytoCompare objects |
| print-methods | Textual preview for all S4 CytoCompare objects |
| quantiles.density | Quantiles of a DENSITY object |
| quantiles.uniform | Quantiles of a uniform distribution |
| RES-class | RES class definition |
| res.dendro | Dendrogram representation of the comparisons results |
| res.graph | Circular graph representation of a RES object |
| res.mds | Create a Multidimensional scaling representation of a RES... |
| set-methods | Change marker weights in a MWEIGHTS object |
| show-methods | Textual preview for all S4 CytoCompare objects |
| SPADEResults-class | SPADEResults class definition |
