dheatmap: Density heatmap of the marker expression

In tchitchek-lab/CytoCompare: Computational comparisons of cytometry profiles

Description

Generates a marker density heatmap for the cell cluster profiles stored in a 'CLUSTER' object.

Usage

dheatmap(cluster, density.max = NULL, barwidth = 5,
  scale_densities = TRUE, return.gg = FALSE)

Arguments

cluster	a CLUSTER object containing one or several cell cluster profiles
density.max	a numeric specifying the maximal density gradient value in the heatmap
barwidth	a numeric specifying the width of each bar of the representation
scale_densities	a boolean specifying if the gradient scale of each marker must be adapted
return.gg	a logical indicating if the function should return a list of ggplot objects

Details

In such representation, each bar corresponds to a marker and the color gradient is proportional to the marker expression density.

Value

if return.gg is TRUE, the function returns a list of ggplot objects

tchitchek-lab/CytoCompare documentation built on May 31, 2019, 7:29 a.m.