res.graph: Circular graph representation of a RES object

In tchitchek-lab/CytoCompare: Computational comparisons of cytometry profiles

Description

Creates a circular graph representation of the comparison results. In such graph representation, each cytometry profile is represented by a node and links between the nodes represent significant similarities or inclusions between the profiles. Nodes are positioned on a circular layout and organized based on their object names.

Usage

res.graph(res, filename = "res.html", svgsize = 1000,
  pvalue.th = 0.05, color_edges = TRUE)

Arguments

res	a RES object
filename	a character specifying a file location where to save the HTML file of the representation
svgsize	a numeric value specifying the size of the SVG representation in pixels
pvalue.th	a numeric value specifying a p-value cutoff. Only the associations below this specific value will be returned
color_edges	a boolean value specifying if edges but be colored

Details

The representation is provided as an interactive HTML file via a Scalable Vector Graphics (SVG) element created with the D3.js library. Users can interact with the representation by modifying the link tensions and the p-value cutoff for the significant similarities or inclusions.

Value

none

tchitchek-lab/CytoCompare documentation built on May 31, 2019, 7:29 a.m.