CytoCompare: Computational comparisons of cytometry profiles

Imports one or several cell cluster profiles identified by the viSNE/ACCENSE algorithm into a CLUSTER object.

import.VISNE_ACCENSE(file, exclude = NULL, trans = "arcsinh",
  trans.para = switch(trans, arcsinh = list(arcsinh.scale = 5), log =
  list(log.shift = "auto", log.base = 10), none = NULL),
  trans.exclude = "population", bin.width = 0.05)

`file`	a character indicating the location to a zip or a folder containing the SPADE results
`exclude`	a character vector containing the marker names to be excluded in the import procedure
`trans`	a character specifying the name of a transformation function to apply on the marker expression intensities. Possible functions are "arcsinh" for arc sin hyperbolic transformation (default), "log" for logarithmic transformation, or "none" for no transformation
`trans.para`	a named list containing parameters for the transformation. Please refer to the details section for more details
`trans.exclude`	a character vector containing the marker names for which no transformation must be applied on
`bin.width`	a numeric value indicating the width of the bins for the marker expression densities computations