res.mds: Create a Multidimensional scaling representation of a RES...

In tchitchek-lab/CytoCompare: Computational comparisons of cytometry profiles

Description

Creates a Multidimensional scaling (MDS) representation of the comparison results. In such MDS representation each cytometry profile is represented by a dot in a two-dimensional space and the distances between the nodes are proportional to the distance measures between the profiles. The Kruskal Stress displayed at the left bottom of the representation quantifies the quality of the representation as the percentage of information lost in the dimensionality reduction process.

Usage

res.mds(res, filename = "res.html", cols = NULL, sizes = NULL,
  svgsize = 1000)

Arguments

res	a RES object
filename	a file location where to save the objects
cols	a character vector specifying the colours of the node in the SVG representation
sizes	a numeric vector specifying the sizes of the nodes in pixels in the SVG representation
svgsize	a numeric value specifying the size of the SVG representation in pixels

Details

The representation is provided as a HTML file via a Scalable Vector Graphics (SVG) element created with the D3.js library.

Value

none

tchitchek-lab/CytoCompare documentation built on May 31, 2019, 7:29 a.m.