res.dendro: Dendrogram representation of the comparisons results
In tchitchek-lab/CytoCompare: Computational comparisons of cytometry profiles

Description Usage Arguments Details Value

CytoCompare can also represent these phenotype distances between the cell clusters using dendrograms. In such dendrogram, each leaf corresponds to a cell cluster, and the branching diagram represents the relationships of similarity among the cell clusters.

1	res.dendro(res, method = "complete")

`res`	a RES object
`method`	a character of the agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC).

Hierarchical clustering can be constructed based on different linkage methods, such as the complete linkage represented here.

a ggplot plot object represnetating a dendrogram

tchitchek-lab/CytoCompare documentation built on May 31, 2019, 7:29 a.m.