circlesPackingViewer: Visualization of abundance profiles classification

In tchitchek-lab/SPADEVizR: SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results

Visualization of abundance profiles classification

Description

Generates a colored circle packing representation showing for each cluster: its associated class based on its abundance profile.

Usage

circlesPackingViewer(AP, show.cluster_sizes = TRUE,
  show.on_device = TRUE)

Arguments

AP	an object of class 'AP' (object returned by the 'classifyAbundanceProfiles()' function)
show.cluster_sizes	a logical specifying if dot sizes are proportional to number of associated cells
show.on_device	a logical specifying if the representation will be displayed on device

Details

The sizes of the dots are proportionals to the total number of associated cells to each cluster. Circle packing classes are sorted by the number of clusters in each class.

Value

a 'ggplot' object

tchitchek-lab/SPADEVizR documentation built on Jan. 27, 2024, 8:58 p.m.