plot-methods: Visualization for all SPADEVizR objects

In tchitchek-lab/SPADEVizR: SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results

Visualization for all SPADEVizR objects

Description

Generates a graphical representation for all SPADEVizR objects ('Results', 'AC', 'DAC', 'CC', and 'AP' objects).

Usage

plot(x, y = NULL, ...)

## S4 method for signature 'Results,missing'
plot(x, y = NULL, ...)

## S4 method for signature 'AC,missing'
plot(x, y = NULL, ...)

## S4 method for signature 'DAC,missing'
plot(x, y = NULL, ...)

## S4 method for signature 'CC,missing'
plot(x, y = NULL, ...)

## S4 method for signature 'AP,missing'
plot(x, y = NULL, ...)

Arguments

x	a 'Results', 'AC', 'DAC', 'CC' and 'AP' object
y	unused parameter
...	supplementary parameters transmitted to the 'heatmapViewer()', 'abundantClustersViewer()', 'volcanoViewer()', 'correlatedClustersViewer()' or 'circlesPackingViewer()' functions

Details

'Results' objects are represented using the 'heatmapViewer()' function. 'AC' objects are represented using the 'abundantClustersViewer()' function. 'DAC' objects are represented using the 'volcanoViewer()' function. 'CC' objects are represented using the 'correlatedClustersViewer()' function. 'AP' objects are represented using the 'circlesPackingViewer()' function.

Value

a 'ggplot' object

tchitchek-lab/SPADEVizR documentation built on Jan. 27, 2024, 8:58 p.m.