kineticsViewer: Visualization of cluster enrichment profiles kinetics

In tchitchek-lab/SPADEVizR: SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results

Visualization of cluster enrichment profiles kinetics

Description

The Kinetics Viewer aims to visualize the cell cluster abundances in a kinetics manner. This representation displays the cell abundances over the time for each individual. The cell cluster abundances could be displayed as percentages or absolute numbers using the 'use.percentages' parameter (TRUE by default).

Usage

kineticsViewer(Results, samples = NULL, clusters = NULL,
  use.percentages = TRUE, show.on_device = TRUE, scale_y = NULL)

Arguments

Results	a 'Results' object
samples	a character vector providing the sample names to used (all samples by default)
clusters	a character or a character vector containing the cluster to be shown or if multiple clusters which will be merged
use.percentages	a logical specifying if the visualization should be performed on percentage
show.on_device	a logical specifying if the representation will be displayed on device
scale_y	a numeric value specifying the maximal value in y axsis

Details

Timepoints and indivuals information must be assigned to the samples in order to use this viewer (provided by the slot 'assignments' in the 'Results' object).

Value

a 'ggplot' object

tchitchek-lab/SPADEVizR documentation built on Jan. 27, 2024, 8:58 p.m.