annotateClusters: Annotating cell clusters

In tchitchek-lab/SPADEVizR: SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results

Annotating cell clusters

Description

This function is used to annotate cell clusters based on their marker expression categories. The annotations of cell clusters must be specifyed using a character dataframe indicating for each marker of each population the matching categorial values.

Usage

annotateClusters(Results, annotations, num = 5,
  display.annotations = TRUE)

Arguments

Results	a Results object
annotations	a character dataframe specifying the annotations
num	a numeric value specifying the number of markers expression categories to be used
display.annotations	a logical value indicating if a graphic must be generated to display the annotations of the cell clusters

Details

The annotation data.frame must have the annotations in rows and the markers in colomuns. Matching values must be specified as a character list of acceptable values.

Value

a Results object

tchitchek-lab/SPADEVizR documentation built on Jan. 27, 2024, 8:58 p.m.