load.flowSet: Loading of FCS files object into a 'Results' object
In tchitchek-lab/SPADEVizR: SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results
load.flowSet R Documentation
Loading of FCS files object into a 'Results' object
Description
This function loads the FCS files to the 'flowset' slot of the 'Results' object.
Usage
load.flowSet(Results = NULL, fcs.files, exclude.markers, trans,
pattern = ".fcs.density.fcs.cluster.fcs")
Arguments
Results
a Results object (with 'fcs.files' slot not null) (optional)
fcs.files
a character vector containing the absolute path of the original FCS files
exclude.markers
a character vector of markers to exclude (case insensitive)
trans
a character specifying what transformation ("arcsinh", "logicle", or "none") will be applied on the cluster expression matrix ("arcsinh" by default)
pattern
a character specifying the pattern of the FCS file
Details
If a 'Results' object is provided, others parameters ('fcs.files', 'exclude.markers' and 'trans') will be ignored (they will be retrieved from the 'Results' object).
Value
a S4 'flowSet' object
tchitchek-lab/SPADEVizR documentation built on Jan. 27, 2024, 8:58 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| load.flowSet | R Documentation |
Loading of FCS files object into a 'Results' object
Description
This function loads the FCS files to the 'flowset' slot of the 'Results' object.
Usage
load.flowSet(Results = NULL, fcs.files, exclude.markers, trans,
pattern = ".fcs.density.fcs.cluster.fcs")
Arguments
Results |
a Results object (with 'fcs.files' slot not null) (optional) |
fcs.files |
a character vector containing the absolute path of the original FCS files |
exclude.markers |
a character vector of markers to exclude (case insensitive) |
trans |
a character specifying what transformation ("arcsinh", "logicle", or "none") will be applied on the cluster expression matrix ("arcsinh" by default) |
pattern |
a character specifying the pattern of the FCS file |
Details
If a 'Results' object is provided, others parameters ('fcs.files', 'exclude.markers' and 'trans') will be ignored (they will be retrieved from the 'Results' object).
Value
a S4 'flowSet' object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.