API for tdhock/PeakSegPipeline
Genome-Wide Peak Calling Using PeakSegFPOP and PeakSegJoint

Global functions
PBS.header.default Man page
PPN.cores Man page Source code
PeakSegFPOP_disk Man page
PeakSegPipeline Man page
PeakSegPipeline-package Man page
Rscript Man page Source code
bedGraphCoverage Man page Source code
bigWigCoverage Man page Source code
bigWigInfo Man page Source code
convert_labels Man page Source code
create_problems_all Man page Source code
create_problems_joint Man page Source code
create_track_hub Man page Source code
denormalizeBedGraph Man page Source code
denormalizeBigWig Man page Source code
downloadBigWigs Man page Source code
downloadProblems Man page Source code
fread.or.null Man page Source code
gap2problems Man page Source code
maxjobs.mclapply Man page Source code
mclapply.or.stop Man page Source code
pipeline Man page Source code
plot_all Man page Source code
problem.PeakSegFPOP Man page Source code
problem.coverage Man page Source code
problem.features Man page Source code
problem.joint Man page Source code
problem.joint.plot Man page Source code
problem.joint.predict Man page Source code
problem.joint.predict.job Man page Source code
problem.joint.predict.many Man page Source code
problem.joint.target Man page Source code
problem.joint.targets Man page Source code
problem.joint.targets.train Man page Source code
problem.joint.train Man page Source code
problem.pred.cluster.targets Man page Source code
problem.predict Man page Source code
problem.predict.allSamples Man page Source code
problem.target Man page Source code
problem.train Man page Source code
readBigWig Man page Source code
readBigWigSamples Man page Source code
readCoverage Man page Source code
system.or.stop Man page Source code
ucsc.goldenPath.url Man page
tdhock/PeakSegPipeline documentation built on April 4, 2018, 2:07 p.m.