plot_all: plot all

In tdhock/PeakSegPipeline: Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation

Description

Gather and plot results of peak calling, generate summary web page set.dir.arg/index.html. Labeled chunk plots are created in parallel via psp_lapply. If set.dir.arg/hub.sh exists it is called at the end of this function in order to generate a track hub based on the peak model files – it should contain something like Rscript -e 'PeakSegPipeline::create_track_hub(...)'

Usage

plot_all(set.dir.arg, 
    zoom.out.times = 10, 
    verbose = getOption("PeakSegPipeline.verbose", 
        1))

Arguments

set.dir.arg	Path/to/data/dir.
zoom.out.times
verbose

Value

Nothing.

Author(s)

Toby Dylan Hocking

tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.