Files in tdhock/PeakSegPipeline
Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/PeakSegFPOP.R R/PeakSegJoint.R R/bigwig.R R/convert_labels.R R/coverage.R R/create_problems_joint.R R/create_track_hub.R R/denormalize.R R/downloadBigWigs.R R/downloadProblems.R R/gap2problems.R R/jobs.R R/plot_all.R R/system.or.stop.R
README.org
appveyor.yml
batchtools.conf.R
build.sh
data/Mono27ac.RData
inst/extdata/norm-big-coverage.bedGraph
inst/templates/slurm-afterok.tmpl
man/Mono27ac.Rd man/PeakSegPipeline-package.Rd man/bedGraphCoverage.Rd man/bedGraphToBigWig.Rd man/bigWigCoverage.Rd man/bigWigInfo.Rd man/bigWigToBedGraph.Rd man/bigWigToBedGraphCommand.Rd man/convert_labels.Rd man/create_problems_joint.Rd man/create_track_hub.Rd man/denormalizeBedGraph.Rd man/denormalizeBigWig.Rd man/downloadBigWigs.Rd man/downloadProblems.Rd man/gap2problems.Rd man/jobs_create.Rd man/jobs_create_run.Rd man/jobs_submit_batchtools.Rd man/orderChrom.Rd man/plot_all.Rd man/problem.coverage.Rd man/problem.features.Rd man/problem.joint.Rd man/problem.joint.plot.Rd man/problem.joint.predict.Rd man/problem.joint.predict.job.Rd man/problem.joint.predict.many.Rd man/problem.joint.target.Rd man/problem.joint.targets.Rd man/problem.joint.targets.train.Rd man/problem.joint.train.Rd man/problem.labels.Rd man/problem.models.Rd man/problem.pred.cluster.targets.Rd man/problem.predict.Rd man/problem.predict.allSamples.Rd man/problem.table.Rd man/problem.target.Rd man/problem.tempfile.Rd man/problem.train.Rd man/psp_lapply.Rd man/readBigWig.Rd man/stop.without.ucsc.Rd man/system.or.stop.Rd man/ucsc.goldenPath.url.Rd
slurm.conf
src/coverage.cpp
src/coverage.h
src/denormalize.cpp
src/denormalize.h
src/interface.cpp
tests/testthat.R tests/testthat/test-CRAN-bedGraphCoverage.R tests/testthat/test-CRAN-convert-labels.R tests/testthat/test-CRAN-gap2problems.R tests/testthat/test-CRAN-target.R tests/testthat/test-OTHER-bedGraphToBigWig.R tests/testthat/test-OTHER-create-track-hub-jointpeaks.R tests/testthat/test-OTHER-create-track-hub-nojointpeaks.R tests/testthat/test-OTHER-joint.R tests/testthat/test-pipeline-demo.R tests/testthat/test-pipeline-input.R tests/testthat/test-pipeline-noinput.R
tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.