create_track_hub: create track hub

In tdhock/PeakSegPipeline: Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation

Description

Create track hub for a project.

Usage

create_track_hub(data.dir.path, 
    data.dir.url, genome, 
    email, goldenPath.url = ucsc.goldenPath.url, 
    verbose = getOption("PeakSegPipeline.verbose", 
        1))

Arguments

data.dir.path	data/project directory path on local filesystem.
data.dir.url	URL for data/project directory, for constructing URLs to bigWig/bigBed files in the trackDb.txt file, e.g. if data.dir.url="http://some.domain/~user/demo_project" then your trackDb.txt file will contain URLs like http://some.domain/~user/demo_project/samples/groupID/sampleID/coverage.bigWig
genome	genome string as defined at UCSC, e.g. "hg19"
email	email address for maintainer of track hub.
goldenPath.url	link to download UCSC genome chromInfo files, necessary for creating bigWigs.
verbose

Author(s)

Toby Dylan Hocking

tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.