gap2problems: gap2problems
In tdhock/PeakSegPipeline: Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation
Description
Usage
Arguments
Author(s)
Description
Convert a gap file from UCSC to a problems.bed file, which is used
in the PeakSegPipeline to determine where PeakSegFPOP should be
run to do peak calling for each sample independently.
Usage
1
2
gap2problems(gap.bed,
chromInfo.txt, problems.bed)
Arguments
gap.bed
gap.bed file, parts of the genome with gaps (NNNN).
chromInfo.txt
chromInfo.txt file, chromosome sizes.
problems.bed
will be created
Author(s)
Toby Dylan Hocking
tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.
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Description Usage Arguments Author(s)
Description
Convert a gap file from UCSC to a problems.bed file, which is used
in the PeakSegPipeline to determine where PeakSegFPOP should be
run to do peak calling for each sample independently.
Usage
1 2 | gap2problems(gap.bed,
chromInfo.txt, problems.bed)
|
Arguments
gap.bed |
|
chromInfo.txt |
|
problems.bed |
will be created |
Author(s)
Toby Dylan Hocking
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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