bigWigToBedGraphCommand: bigWigToBedGraphCommand

In tdhock/PeakSegPipeline: Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation

Description

Get command line to run bigWigToBedGraph.

Usage

bigWigToBedGraphCommand(in.bigWig, 
    out.bedGraph, chrom = NULL, 
    start = NULL, end = NULL)

Arguments

in.bigWig	character string path to input bigWig file.
out.bedGraph	character string path to output bedGraph file.
chrom	character string, chromosome name to filter data.
start	start position to filter data.
end	end position to filter data.

Author(s)

Toby Dylan Hocking

Examples

PeakSegPipeline::bigWigToBedGraphCommand(
  "in.bigWig", "out.bedGraph", "chr1", 0, 100)

tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.