create_problems_joint: create problems joint

In tdhock/PeakSegPipeline: Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation

Description

Create joint problems for one separate problem, after separate peak prediction. Parallelized over joint problems via psp_lapply.

Usage

create_problems_joint(prob.dir, 
    peaks = NULL, verbose = getOption("PeakSegPipeline.verbose", 
        1))

Arguments

prob.dir	proj.dir/problems/problemID
peaks	data.table of peaks predicted in all samples for this problem (if it has already been computed by problem.predict.allSamples), or NULL which means to read predicted peaks from proj.dir/samples/*/*/problemID/peaks.bed files.
verbose

Author(s)

Toby Dylan Hocking

tdhock/PeakSegPipeline documentation built on March 3, 2020, 1:35 a.m.