Man pages for tdhock/PeakSegPipeline
Genome-Wide Peak Prediction Using Supervised Learning and Optimal Segmentation
| bedGraphCoverage | bedGraphCoverage |
| bedGraphToBigWig | bedGraphToBigWig |
| bigWigCoverage | bigWigCoverage |
| bigWigInfo | bigWigInfo |
| bigWigToBedGraph | bigWigToBedGraph |
| bigWigToBedGraphCommand | bigWigToBedGraphCommand |
| convert_labels | convert labels |
| create_problems_joint | create problems joint |
| create_track_hub | create track hub |
| denormalizeBedGraph | denormalizeBedGraph |
| denormalizeBigWig | denormalizeBigWig |
| downloadBigWigs | downloadBigWigs |
| downloadProblems | downloadProblems |
| gap2problems | gap2problems |
| jobs_create | jobs create |
| jobs_create_run | jobs create run |
| jobs_submit_batchtools | jobs submit batchtools |
| Mono27ac | A small ChIP-seq data set in which peaks can be found using... |
| orderChrom | orderChrom |
| PeakSegPipeline-package | A short title line describing what the package does |
| plot_all | plot all |
| problem.coverage | problem coverage |
| problem.features | problem features |
| problem.joint | problem joint |
| problem.joint.plot | problem joint plot |
| problem.joint.predict | problem joint predict |
| problem.joint.predict.job | problem joint predict job |
| problem.joint.predict.many | problem joint predict many |
| problem.joint.target | problem joint target |
| problem.joint.targets | problem joint targets |
| problem.joint.targets.train | problem joint targets train |
| problem.joint.train | problem joint train |
| problem.labels | problem labels |
| problem.models | problem models |
| problem.pred.cluster.targets | problem pred cluster targets |
| problem.predict | problem predict |
| problem.predict.allSamples | problem predict allSamples |
| problem.table | problem table |
| problem.target | problem target |
| problem.tempfile | problem tempfile |
| problem.train | problem train |
| psp_lapply | psp lapply |
| readBigWig | readBigWig |
| stop.without.ucsc | stop without ucsc |
| system.or.stop | system or stop |
| ucsc.goldenPath.url | ucsc goldenPath url |
