API for thednainus/HIVepisimAnalysis
Functions to analyse results from network analysis
| Global functions | |
|---|---|
| W_manipulations | Source code |
| add_observed_values | Man page Source code |
| add_observed_values_direction | Man page Source code |
| add_observed_values_directness | Man page Source code |
| add_root_edge | Man page Source code |
| add_root_edge2 | Man page Source code |
| add_sampled_times | Man page Source code |
| cd4s | Source code |
| check_data_cm | Source code |
| check_linked_transmissions | Man page Source code |
| check_true_pair | Man page Source code |
| check_true_pair_directness | Man page Source code |
| check_true_transmissions | Man page Source code |
| compute_log_importance_weight_incidence | Man page |
| compute_log_importance_weight_newDx | Man page |
| convert_branches | Man page Source code |
| create_inf_csv | Man page Source code |
| create_inf_csv2 | Man page Source code |
| create_sample_csv | Man page Source code |
| create_sample_csv2 | Man page Source code |
| create_times_tsv | Man page Source code |
| create_transmissions_tsv | Man page Source code |
| days2years | Man page Source code |
| est_sampleSize | Man page Source code |
| get.transmat.phylo | Man page Source code |
| get_cd4s | Man page Source code |
| get_cd4s_sampling | Man page Source code |
| get_chain | Man page Source code |
| get_difference | Man page Source code |
| get_epi_data | Man page Source code |
| get_id_by_location | Man page Source code |
| get_n_by_origin | Man page Source code |
| get_newTip_names | Man page Source code |
| get_newids | Man page Source code |
| get_origin_at_samplingTime | Man page Source code |
| get_precision_recall | Man page Source code |
| get_rates | Man page Source code |
| get_rates2 | Man page Source code |
| get_subset_tips | Man page Source code |
| get_tipNames | Man page Source code |
| get_tip_cherry | Man page Source code |
| keep_row | Man page Source code |
| merge_trees | Man page Source code |
| name_of_tips | Man page Source code |
| order_IDs_byDate | Man page Source code |
| recency_test | Man page Source code |
| reorder_tip_names | Man page Source code |
| replace_dups | Man page Source code |
| sampleIDs | Man page Source code |
| sampleIDs2 | Man page Source code |
| selectIDs | Man page Source code |
| set_sampledIDs | Man page Source code |
| split_dirs | Man page Source code |
| summarize_all_data | Man page Source code |
| summarize_data | Man page Source code |
| summarize_trans | Man page Source code |
| summarize_trans_compl | Man page Source code |
| summaryW | Man page Source code |
| summaryW2 | Man page Source code |
| time_atSeroconversion | Man page Source code |
| validadeW | Man page Source code |
| wiw | Man page Source code |
