summarize_all_data: Summarize all results obtained with phyloscanner
In thednainus/HIVepisimAnalysis: Functions to analyse results from network analysis
View source: R/summary_utils.R
summarize_all_data R Documentation
Summarize all results obtained with phyloscanner
Description
Summarize all results obtained with phyloscanner
Usage
summarize_all_data(results_phylo)
Arguments
results_phylo
Dataframe containing the values for number of transmission
pairs analysed, number of true pairs within the total pairs analysed, number
of true transmission pairs identified by phyloscanner, etc. by replicate,
combination of parameter values and migration rate.
Details
This function is used in the R script summarize_phyloscanner_results_v2
(check scripts in HIVepisimAnalysis GitHub)
Value
Tibble object with the total number of pairs analysed, total number of
true transmissions, total number of true positives as identified by phyloscanner,
total number of false negatives by phyloscanner, total number of swaps
(host.2 infected host.1, instead of host.1 infected host.2), and total
number of false positives as identified by phyloscanner.
thednainus/HIVepisimAnalysis documentation built on Sept. 21, 2023, 7:32 a.m.
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View source: R/summary_utils.R
| summarize_all_data | R Documentation |
Summarize all results obtained with phyloscanner
Description
Summarize all results obtained with phyloscanner
Usage
summarize_all_data(results_phylo)
Arguments
results_phylo |
Dataframe containing the values for number of transmission pairs analysed, number of true pairs within the total pairs analysed, number of true transmission pairs identified by phyloscanner, etc. by replicate, combination of parameter values and migration rate. |
Details
This function is used in the R script summarize_phyloscanner_results_v2 (check scripts in HIVepisimAnalysis GitHub)
Value
Tibble object with the total number of pairs analysed, total number of true transmissions, total number of true positives as identified by phyloscanner, total number of false negatives by phyloscanner, total number of swaps (host.2 infected host.1, instead of host.1 infected host.2), and total number of false positives as identified by phyloscanner.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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