allPairAligns: All pairwise alignments
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
View source: R/bioinfo_sequences.R
allPairAligns R Documentation
All pairwise alignments
Description
Align each sequence against each other (and itself)
Usage
allPairAligns(x, type = "global", ...)
Arguments
x
vector of sequences (e.g. "AGGT"), possibly with names
type
type of alignment ("global", i.e. Needleman-Wunsch)
...
arguments to be passed to Biostrings::pairwiseAlignment()
Details
Requires the Biostrings package.
Value
list of instances of class PairwiseAlignments
Author(s)
Timothee Flutre
timflutre/rutilstimflutre documentation built on Aug. 18, 2024, 7:43 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/bioinfo_sequences.R
| allPairAligns | R Documentation |
All pairwise alignments
Description
Align each sequence against each other (and itself)
Usage
allPairAligns(x, type = "global", ...)
Arguments
x |
vector of sequences (e.g. "AGGT"), possibly with names |
type |
type of alignment ("global", i.e. Needleman-Wunsch) |
... |
arguments to be passed to Biostrings::pairwiseAlignment() |
Details
Requires the Biostrings package.
Value
list of instances of class PairwiseAlignments
Author(s)
Timothee Flutre
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.