View source: R/bioinfo_sequences.R
allPairAligns | R Documentation |
Align each sequence against each other (and itself)
allPairAligns(x, type = "global", ...)
x |
vector of sequences (e.g. "AGGT"), possibly with names |
type |
type of alignment ("global", i.e. Needleman-Wunsch) |
... |
arguments to be passed to Biostrings::pairwiseAlignment() |
Requires the Biostrings package.
list of instances of class PairwiseAlignments
Timothee Flutre
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