calcFreqNaVcf: Missing genotypes in VCF

calcFreqNaVcfR Documentation

Missing genotypes in VCF

Description

Calculate the frequency of missing genotypes for each marker.

Usage

calcFreqNaVcf(vcf, with.coords = FALSE)

Arguments

vcf

CollapsedVCF (see pkg VariantAnnotation)

with.coords

if TRUE, a GRanges object is returned

Value

numeric vector or GRanges

Author(s)

Timothee Flutre


timflutre/rutilstimflutre documentation built on Aug. 18, 2024, 7:43 p.m.