blast2granges: BLAST
In timflutre/rutilstimflutre: Timothee Flutre's personal R code
blast2granges R Documentation
BLAST
Description
Convert a data.frame containing alignments coordinates from BLAST into a GRanges object.
Usage
blast2granges(coords)
Arguments
coords
data.frame with 14 columns (see loadBlast)
Value
GRanges
Author(s)
Timothee Flutre
See Also
loadBlast
Examples
## Not run: ## BLAST should be run beforehand, see the example of `loadBlast`:
coords <- loadBlast("megablast_chroms_seqs.txt.gz", asGRanges=FALSE)
coords.gr <- blast2granges(coords)
## End(Not run)
timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.
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| blast2granges | R Documentation |
BLAST
Description
Convert a data.frame containing alignments coordinates from BLAST into a GRanges object.
Usage
blast2granges(coords)
Arguments
coords |
data.frame with 14 columns (see |
Value
GRanges
Author(s)
Timothee Flutre
See Also
loadBlast
Examples
## Not run: ## BLAST should be run beforehand, see the example of `loadBlast`:
coords <- loadBlast("megablast_chroms_seqs.txt.gz", asGRanges=FALSE)
coords.gr <- blast2granges(coords)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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