addCountsOfFeatureClasses: Count occurrences of feature classes
In timjeske/DEUS: Differential expression of unique sequences
Description
Usage
Arguments
Value
Description
As each unique sequence can have a lot of BLAST hits this function counts the number of hits grouped by user defined feature classes.
Usage
1
addCountsOfFeatureClasses(summary, feature_classes)
Arguments
summary
Summary table generated by mergeResults (requires BLAST result generated by runBlast)
feature_classes
List of features representing classes to be counted.
Features can be defined as regular expressions, as described in stringi-search-regex.
Value
The summary table with additional columns for each feature term given by the user.
Each column holds the number of features in 'FeatureList' that match the corresponding feature term.
The column 'Other' reflects the number of all features in the 'FeatureList' after substracting the sum of feature class matches.
timjeske/DEUS documentation built on June 6, 2019, 12:59 p.m.
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Description Usage Arguments Value
Description
As each unique sequence can have a lot of BLAST hits this function counts the number of hits grouped by user defined feature classes.
Usage
1 | addCountsOfFeatureClasses(summary, feature_classes)
|
Arguments
summary |
Summary table generated by mergeResults (requires BLAST result generated by runBlast) |
feature_classes |
List of features representing classes to be counted. Features can be defined as regular expressions, as described in stringi-search-regex. |
Value
The summary table with additional columns for each feature term given by the user. Each column holds the number of features in 'FeatureList' that match the corresponding feature term. The column 'Other' reflects the number of all features in the 'FeatureList' after substracting the sum of feature class matches.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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