getNoBlastHitFraction: Compute fraction of reads without BLAST hit for each sample
In timjeske/DEUS: Differential expression of unique sequences
Description
Usage
Arguments
Value
Description
Compute fraction of reads without BLAST hit for each sample
Usage
1
getNoBlastHitFraction(summary, count_table)
Arguments
summary
Summary table generated by mergeResults (requires BLAST result generated by runBlast)
count_table
A table of (normalized) sequence counts.
A sequence count table can be generated by createCountTableFromFastQs and normalized by applying runDESeq2
Value
A data frame with samples as row names and the column 'NA_fraction'
timjeske/DEUS documentation built on June 6, 2019, 12:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Compute fraction of reads without BLAST hit for each sample
Usage
1 | getNoBlastHitFraction(summary, count_table)
|
Arguments
summary |
Summary table generated by mergeResults (requires BLAST result generated by runBlast) |
count_table |
A table of (normalized) sequence counts. A sequence count table can be generated by createCountTableFromFastQs and normalized by applying runDESeq2 |
Value
A data frame with samples as row names and the column 'NA_fraction'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.