sequencesAsFasta: Create a vector of sequence identifiers and sequences in...
In timjeske/DEUS: Differential expression of unique sequences
Description
Usage
Arguments
Value
Description
Create a vector of sequence identifiers and sequences in FASTA format
Usage
1
sequencesAsFasta(de_result, map)
Arguments
de_result
A data frame with sequences as row names.
In the context of DEUS, the data frame is the resulting table of differential expression analysis with significant sequences as row names.
Differential expression analysis can be performed via runDESeq2
map
A data frame with sequences as row names and sequence identifiers in first column.
Can be generated by createMap
Value
A vector of alternating sequence identifiers and nucleotide sequences
timjeske/DEUS documentation built on June 6, 2019, 12:59 p.m.
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Description Usage Arguments Value
Description
Create a vector of sequence identifiers and sequences in FASTA format
Usage
1 | sequencesAsFasta(de_result, map)
|
Arguments
de_result |
A data frame with sequences as row names. In the context of DEUS, the data frame is the resulting table of differential expression analysis with significant sequences as row names. Differential expression analysis can be performed via runDESeq2 |
map |
A data frame with sequences as row names and sequence identifiers in first column. Can be generated by createMap |
Value
A vector of alternating sequence identifiers and nucleotide sequences
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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