writeSummaryFiles: Write summary tables for DEUS result
In timjeske/DEUS: Differential expression of unique sequences
Description
Usage
Arguments
Value
Description
Write summary tables for DEUS result
Usage
1
writeSummaryFiles(summary, out_dir, expressed_only = TRUE)
Arguments
summary
Summary table generated by mergeResults (requires BLAST result generated by runBlast)
out_dir
Directory where summary tables are written
expressed_only
If true (default), only sequences with an IHWPvalue are provided in the output file. Sequences without IHWPvalue were not part of the DE analysis and therefore are assumed to have low expression values. If filtering is turned off, output files might include a large number of rows.
Value
Files are written to the output directory. 'SummaryTable.tsv' corresponds to the table generated by mergeResults.
The table is split into a file 'SummaryTable_withBlast.tsv' and a file 'SummaryTable_noBlast.tsv' representing the sequences that have a BLAST hit and those with no BLAST hit.
timjeske/DEUS documentation built on June 6, 2019, 12:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Write summary tables for DEUS result
Usage
1 | writeSummaryFiles(summary, out_dir, expressed_only = TRUE)
|
Arguments
summary |
Summary table generated by mergeResults (requires BLAST result generated by runBlast) |
out_dir |
Directory where summary tables are written |
expressed_only |
If true (default), only sequences with an IHWPvalue are provided in the output file. Sequences without IHWPvalue were not part of the DE analysis and therefore are assumed to have low expression values. If filtering is turned off, output files might include a large number of rows. |
Value
Files are written to the output directory. 'SummaryTable.tsv' corresponds to the table generated by mergeResults. The table is split into a file 'SummaryTable_withBlast.tsv' and a file 'SummaryTable_noBlast.tsv' representing the sequences that have a BLAST hit and those with no BLAST hit.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.