plotPCA: Plot result of PCA
In timjeske/DEUS: Differential expression of unique sequences
Description
Usage
Arguments
Value
Description
This function is internally called by runDESeq2
Usage
1
plotPCA(rld, pheno_info, out_dir, prefix = "DESeq2")
Arguments
rld
Count table after 'regularized log transformation' by rlog
pheno_info
A data frame with sample identifiers as row names including maximal two columns defining (sub-)conditions.
The sample identifiers must be identical to those in the rld table.
out_dir
Directory for PDF file including the PCA plot
prefix
Prefix for name of PDF file
Value
DESeq2_PCA.pdf in output directory
timjeske/DEUS documentation built on June 6, 2019, 12:59 p.m.
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Description Usage Arguments Value
Description
This function is internally called by runDESeq2
Usage
1 | plotPCA(rld, pheno_info, out_dir, prefix = "DESeq2")
|
Arguments
rld |
Count table after 'regularized log transformation' by rlog |
pheno_info |
A data frame with sample identifiers as row names including maximal two columns defining (sub-)conditions. The sample identifiers must be identical to those in the rld table. |
out_dir |
Directory for PDF file including the PCA plot |
prefix |
Prefix for name of PDF file |
Value
DESeq2_PCA.pdf in output directory
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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