setNodeAttributes: setNodeAttributes

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Transfer the named node attribute from the R graph (found in obj@graph) to Cytoscape. This method is typically called by displayGraph, which will suffice for most users' needs. It transfers the specified node attributes, for all nodes, from the cw@graph slot to Cytoscape.

Usage

setNodeAttributes(obj, attribute.name)

Arguments

obj	a CytoscapeWindowClass object.
attribute.name	a string one of the attributes defined on the nodes.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setNodeAttributesDirect setEdgeAttributes setEdgeAttributesDirect sendEdges sendNodes displayGraph

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setNodeAttributes.test', graph=makeSimpleGraph())
  attribute.names <- noa.names (cw@graph)
  sendNodes (cw)
  for (attribute.name in attribute.names){
    setNodeAttributes (cw, attribute.name)
  }

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.