API for trvinh/test
PhyloProfile
| Global functions | |
|---|---|
| calc_pres_spec | Man page |
| calculate_p_value | Man page |
| check_input_validity | Man page |
| check_newick | Man page |
| check_oma_id | Man page |
| cluster_data_dend | Man page |
| create_archi_plot | Man page |
| create_domain_df | Man page |
| create_gene_age_plot | Man page |
| create_long_matrix | Man page |
| create_percentage_distribution_data | Man page |
| create_profile_data | Man page |
| create_profile_from_oma | Man page |
| create_rooted_tree | Man page |
| create_var_dist_plot | Man page |
| create_variable_distribution_data | Man page |
| create_variable_distribution_data_subset | Man page |
| data_customized_plot | Man page |
| data_main_plot | Man page |
| domain_plotting | Man page |
| estimate_gene_age | Man page |
| fasta_parser | Man page |
| from_input_to_profile | Man page |
| full_processed_profile | Man page |
| full_processed_profile_large | Man page |
| gene_age_plotDf | Man page |
| get_all_domains_oma | Man page |
| get_all_fasta_oma | Man page |
| get_common_ancestor | Man page |
| get_core_gene | Man page |
| get_data_clustering | Man page |
| get_data_for_one_oma | Man page |
| get_data_for_one_ortholog | Man page |
| get_dendrogram | Man page |
| get_distance_matrix | Man page |
| get_domain_file | Man page |
| get_domain_folder | Man page |
| get_domain_from_url | Man page |
| get_domain_online | Man page |
| get_fasta_seqs | Man page |
| get_features | Man page |
| get_ids_rank | Man page |
| get_input_taxa_id | Man page |
| get_input_taxa_name | Man page |
| get_name_list | Man page |
| get_oma_members | Man page |
| get_p_values | Man page |
| get_prefix_features | Man page |
| get_qual_col_for_vector | Man page |
| get_selected_fasta_oma | Man page |
| get_selected_subset | Man page |
| get_significant_genes | Man page |
| get_taxonomy_matrix | Man page |
| get_taxonomy_ranks | Man page |
| heatmap_plotting | Man page |
| highlight_profile_plot | Man page |
| main_long_raw | Man page |
| parse_domain_input | Man page |
| parse_info_profile | Man page |
| pp_taxonomy_matrix | Man page |
| pp_tree | Man page |
| profile_with_taxonomy | Man page |
| qualitative_colours | Man page |
| rankIndexing | Man page |
| reduce_profile | Man page |
| run_phyloprofile | Man page |
| search_taxonID_online | Man page |
| sort_domains | Man page |
| sort_input_taxa | Man page |
| sort_taxa_from_tree | Man page |
| str_reverse | Man page |
| taxa2dist | Man page |
| taxa_select_gc | Man page |
| taxonomy_table_creator | Man page |
| wide_to_long | Man page |
| xml_parser | Man page |
