taxonomy_table_creator: Align ncbi taxonomy IDs of all taxa into a sorted rank list

In trvinh/test: PhyloProfile

Description

Align ncbi taxonomy IDs of all taxa into a sorted rank list

Usage

taxonomy_table_creator(idListFile, rankListFile)

Arguments

idListFile	a text file whose each row is a rank+ID list of a taxon
rankListFile	a text file whose each row is a rank list of a taxon

Value

An aligned taxonomy dataframe

Author(s)

Vinh Tran [e-mail]

See Also

rankIndexing

Examples

idListFile <- system.file(
    "extdata", "data/idList.txt", package = "phyloprofile", mustWork = TRUE
)
rankListFile <- system.file(
    "extdata", "data/rankList.txt", package = "phyloprofile", mustWork = TRUE
)
taxonomy_table_creator(idListFile, rankListFile)

trvinh/test documentation built on May 9, 2019, 2:26 a.m.