Files in tshmak/lassosum

LASSO with summary statistics and a reference panel

FeatureRequests.md R/RcppExports.R R/comp.ss.bim.R R/elnetR.R R/group.blocks.R R/indeplasso.R R/lassosum.R R/lassosum.pipeline.R R/lassosumR.R R/logical.vector.R R/matchpos.R R/merge.lassosum.R R/merge.lassosum.pipeline.R R/ncol.bfile.R R/not.a.file.R R/nrow.bfile.R R/p2cor.R R/package_lassosum.R R/parse.pheno.covar.R R/parseargs.R R/parseblocks.R R/parseselect.R R/pgs.R R/pgs.default.R R/pgs.vec.R R/plot.validate.lassosum.R R/pseudovalidate.R R/pseudovalidate.lassosum.pipeline.R R/pseudovalidation.R R/pseudovalidationR.R R/read.table2.R R/readbfile.R R/sd.bfile.R R/selectregion.R R/splitgenome.R R/splitvalidate.R R/splitvalidate.lassosum.pipeline.R R/splitvec.from.bfile.R R/subset.lassosum.pipeline.R R/validate.R R/validate.lassosum.pipeline.R R/write.table2.R README.md changelog.md inst/data/Berisa.R inst/data/GenerateData.R inst/lassosum.R lassosum_standalone.md man/comp.ss.bim.Rd man/countlines.Rd man/elnet.Rd man/elnetR.Rd man/genotypeMatrix.Rd man/group.blocks.Rd man/indeplasso.Rd man/lassosum.Rd man/lassosum.pipeline.Rd man/lassosumR.Rd man/logical.vector.Rd man/matchpos.Rd man/merge.lassosum.Rd man/merge.lassosum.pipeline.Rd man/multiBed3.Rd man/multiBed3sp.Rd man/ncol.bfile.Rd man/normalize.Rd man/not.a.file.Rd man/nrow.bfile.Rd man/p2cor.Rd man/parseargs.Rd man/parseselect.Rd man/pgs.Rd man/pgs.vec.Rd man/plot.validate.lassosum.Rd man/pseudovalidate.Rd man/pseudovalidation.Rd man/pseudovalidationR.Rd man/read.table2.Rd man/readbfile.Rd man/runElnet.Rd man/sd.bfile.Rd man/selectregion.Rd man/splitgenome.Rd man/splitvalidate.Rd man/splitvec.from.bfile.Rd man/subset.lassosum.pipeline.Rd man/validate.Rd tests/cp.lassosum.list.test.R tests/cp.meta.test.R tests/cvtests.R tests/test.lassosum.pipeline.R tests/test.standalone.R tests/testthat.R tests/testthat/test.elnet.R tests/testthat/test.lassosum.R tests/testthat/test.lassosumR.R tests/testthat/test.lincom.multiBed3.R tests/testthat/test.runElnet.R