gbtools_plot: Gbtools bin plot for Shiny
In uashogeschoolutrecht/structural_colours: Package For Project Structural Colour
Description
Usage
Arguments
Examples
Description
Gbtools bin plot for Shiny
Usage
1
gbtools_plot(covstats_datapath, taxonomy_datapath, colour_tax_level = "Genus")
Arguments
colour_tax_level
Taxonomy level to colour contigs with, e.g. "Species", "Superkingdom". Default is "Genus".
covstats
Path to bbmap covstat output file
taxonomy
Path to CAT taxonomy output file
Examples
1
2
gbtools_plot(covstats = "/home/rstudio/data/geodescent/test_samples/bbmap/bbmap_megahit_trimmed_control_IR1-reads.fastq/covstats.txt",
taxonomy = "/home/rstudio/data/geodescent/test_samples/CAT/control_IR1-reads/taxonomy.txt")
uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.
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Description Usage Arguments Examples
Description
Gbtools bin plot for Shiny
Usage
1 | gbtools_plot(covstats_datapath, taxonomy_datapath, colour_tax_level = "Genus")
|
Arguments
colour_tax_level |
Taxonomy level to colour contigs with, e.g. "Species", "Superkingdom". Default is "Genus". |
covstats |
Path to bbmap covstat output file |
taxonomy |
Path to CAT taxonomy output file |
Examples
1 2 | gbtools_plot(covstats = "/home/rstudio/data/geodescent/test_samples/bbmap/bbmap_megahit_trimmed_control_IR1-reads.fastq/covstats.txt",
taxonomy = "/home/rstudio/data/geodescent/test_samples/CAT/control_IR1-reads/taxonomy.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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