get_data_ebi: This function downloads metadata and fastq files from ebi by...
In uashogeschoolutrecht/structural_colours: Package For Project Structural Colour
Description
Usage
Arguments
Value
Examples
Description
This function downloads metadata and fastq files from ebi by MGnify accession
Usage
1
get_data_ebi(accession, outdir)
Arguments
accession
MGnify accession, such as MGYS00000492
outdir
Existing directory to store output files
ncbi_dir
Directory where ncbi sra files are stored, edit temp dir path in ~/.ncbi/user-settings.mkfg
Value
total_md5s The md5s of all the input samples
Examples
1
2
get_data_ebi(accession = "MGYS00000492",
outdir = "~/outdir")
uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.
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Description Usage Arguments Value Examples
Description
This function downloads metadata and fastq files from ebi by MGnify accession
Usage
1 | get_data_ebi(accession, outdir)
|
Arguments
accession |
MGnify accession, such as MGYS00000492 |
outdir |
Existing directory to store output files |
ncbi_dir |
Directory where ncbi sra files are stored, edit temp dir path in ~/.ncbi/user-settings.mkfg |
Value
total_md5s The md5s of all the input samples
Examples
1 2 | get_data_ebi(accession = "MGYS00000492",
outdir = "~/outdir")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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