get_fastq: This function uses the fastq_ftp col from the filereport to...
In uashogeschoolutrecht/structural_colours: Package For Project Structural Colour

This function uses the fastq_ftp col from the filereport to download the fastq files of the study.

1	get_fastq(filereport, outdir)

`filereport`	Data frame of filereport, only column used is fastq_ftp. This filereport can be made using get_filereport().
`outdir`	Directory to store output, full path. Will be made by script (mkdir).

The fastq files will be moved to the supplied output directory.

1 2	get_fastq(filereport = filereport, outdir = "/home/rstudio/data/geodescent/samples/TEST")

uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.

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