Description Usage Arguments Value Examples
This function uses the fastq_ftp col from the filereport to download the fastq files of the study.
1 | get_fastq(filereport, outdir)
|
filereport |
Data frame of filereport, only column used is fastq_ftp. This filereport can be made using get_filereport(). |
outdir |
Directory to store output, full path. Will be made by script (mkdir). |
The fastq files will be moved to the supplied output directory.
1 2 | get_fastq(filereport = filereport,
outdir = "/home/rstudio/data/geodescent/samples/TEST")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.