get_fastq: This function uses the fastq_ftp col from the filereport to...

Description Usage Arguments Value Examples

View source: R/get_fastq.R

Description

This function uses the fastq_ftp col from the filereport to download the fastq files of the study.

Usage

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get_fastq(filereport, outdir)

Arguments

filereport

Data frame of filereport, only column used is fastq_ftp. This filereport can be made using get_filereport().

outdir

Directory to store output, full path. Will be made by script (mkdir).

Value

The fastq files will be moved to the supplied output directory.

Examples

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get_fastq(filereport = filereport,
outdir = "/home/rstudio/data/geodescent/samples/TEST")

uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.