run_bbmap: Function to run bbmap program from r
In uashogeschoolutrecht/structural_colours: Package For Project Structural Colour
Description
Usage
Arguments
Value
Examples
Description
Function to run bbmap program from r
Usage
1
Arguments
read1
first read fastq file path
read2
second read fastq file path
ref
contig fasta file
outdir
directory to store output
Value
Creates output at specififed dir
Examples
1
2
3
4
run_bbmap(read1 = "/home/$USER/test_trimming/ERR1424899_1P",
read2 = "/home/$USER/test_trimming/ERR1424899_2P",
ref = "/home/$USER/renamed_contigs.fa",
outdir = "/home/$USER/bbmap_test")
uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.
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Description Usage Arguments Value Examples
Description
Function to run bbmap program from r
Usage
1 |
Arguments
read1 |
first read fastq file path |
read2 |
second read fastq file path |
ref |
contig fasta file |
outdir |
directory to store output |
Value
Creates output at specififed dir
Examples
1 2 3 4 | run_bbmap(read1 = "/home/$USER/test_trimming/ERR1424899_1P",
read2 = "/home/$USER/test_trimming/ERR1424899_2P",
ref = "/home/$USER/renamed_contigs.fa",
outdir = "/home/$USER/bbmap_test")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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