cat_rename_seq_id: Concatenate binned contigs into one file per sample and add...

In uashogeschoolutrecht/structural_colours: Package For Project Structural Colour

Description

Concatenate binned contigs into one file per sample and add samplename and bin name to the headers.

Usage

cat_rename_seq_id(outdir, sample_accession)

Arguments

bin_dirs_parent_dir

String, path to directory containing directories with bins (metabat2 folder in pipeline function output)

Value

A file with the concatenated sequences with renamed headers is created in each sample folder. (total_(samplename).fa)

Examples

## Not run: 
metabat_dir = paste0(samples_dir, "/metabat2")
cat_rename_seq_id(bin_dirs_parent_dir = metabat_dir)

## End(Not run)

uashogeschoolutrecht/structural_colours documentation built on June 20, 2020, 4:07 p.m.