Files in unistbig/compareDEtools
Comparison of multiple DE analysis methods in R
.Rbuildignore
DESCRIPTION
Example for paper figures.R
Manual_CompareDEtools.docx
NAMESPACE
R/AdditionalAnalysisMethod.R
R/DESeq.nbinom.createRmd.R
R/DESeq2.createRmd.R
R/DEanalysis-package.R
R/PoissonSeq.createRmd.R
R/ROTS.createRmd.R
R/SAMseq.createRmd.R
R/SimulationDataGeneration.R
R/baySeq.createRmd.R
R/correlationheatmap.R
R/edgeR.GLM.Robust.createRmd.R
R/edgeR.GLMQL.createRmd.R
R/edgeR.exact.createRmd.R
R/performanceplot.R
R/runDEAnalysis.R
R/voom.limma.createRmd.R
R/voom.qn.limma.createRmd.R
R/voom.sw.limma.createRmd.R
README.md
inst/extdata/ERCC_Controls_Analysis.txt
inst/extdata/GSE49712_HTSeq.txt
inst/extdata/bottomly_eset.RData
man/DESeq.nbinom.createRmd.Rd
man/DESeq2.createRmd.Rd
man/DEanalysis-package.Rd
man/GenerateRealSimulation.Rd
man/GenerateSyntheticSimulation.Rd
man/PoissonSeq.createRmd.Rd
man/ROTS.createRmd.Rd
man/RealDataSimulation.Rd
man/SAMseq.createRmd.Rd
man/SyntheticDataSimulation.Rd
man/baySeq.createRmd.Rd
man/correlation_heatmap.Rd
man/edgeR.GLM.Robust.createRmd.Rd
man/edgeR.GLMQL.createRmd.Rd
man/edgeR.exact.createRmd.Rd
man/fpc_performance_plot.Rd
man/generateDatasetParameter.Rd
man/getDisp.Rd
man/listcreateRmd.Rd
man/performance_plot.Rd
man/performance_realdata_plot.Rd
man/runSimulationAnalysis.Rd
man/run_PCA.Rd
man/select_color.Rd
man/select_tool.Rd
man/simul_methods.Rd
man/voom.limma.createRmd.Rd
man/voom.qn.limma.createRmd.Rd
man/voom.sw.limma.createRmd.Rd
pow.txt
