R/DEanalysis-package.R

In unistbig/compareDEtools: Comparison of multiple DE analysis methods in R

#' RNAseq data simulation, differential expression analysis and
#' performance comparison of differential expression methods
#'
#' This package provides extensive functionality for comparing
#' results obtained by different methods for differential expression analysis
#' of RNAseq data. It also contains functions for simulating count data and
#' interfaces to several packages for performing the differential expression analysis.
#' @name DEanalysis-package
#' @aliases DEanalysis
#' @docType package
#' @import baySeq Biobase compcodeR DESeq DESeq2 edgeR gplots gtools ggplot2 impute limma PoissonSeq reshape RColorBrewer ROCR ROTS samr SimSeq statmod XML
#' @title Differential expression analysis and performance test on differentail expression methods
#' @author BuKyung Baik
#' @keywords package
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