getEnsemblTypes | R Documentation |
Gets the ensembl types of an annotation data.frame either directly from the source, the gene_biotype or the gene_type.
getEnsemblTypes(gff)
gff |
an annotation data.frame in gtf or gff format. |
Returns a character vector containing the types of the elements or NULL if they are not provided in gff
.
Rehrauer, Hubert
Schmid, Peter
param = ezParam()
gtf = ezLoadFeatures(param, system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE))
et = getEnsemblTypes(gtf)
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