getEnsemblTypes: Gets the ensembl types
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
getEnsemblTypes R Documentation
Gets the ensembl types
Description
Gets the ensembl types of an annotation data.frame either directly from the source, the gene_biotype or the gene_type.
Usage
getEnsemblTypes(gff)
Arguments
gff
an annotation data.frame in gtf or gff format.
Value
Returns a character vector containing the types of the elements or NULL if they are not provided in gff.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
param = ezParam()
gtf = ezLoadFeatures(param, system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE))
et = getEnsemblTypes(gtf)
uzh/ezRun documentation built on April 14, 2024, 5:09 a.m.
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| getEnsemblTypes | R Documentation |
Gets the ensembl types
Description
Gets the ensembl types of an annotation data.frame either directly from the source, the gene_biotype or the gene_type.
Usage
getEnsemblTypes(gff)
Arguments
gff |
an annotation data.frame in gtf or gff format. |
Value
Returns a character vector containing the types of the elements or NULL if they are not provided in gff.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
param = ezParam()
gtf = ezLoadFeatures(param, system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE))
et = getEnsemblTypes(gtf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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